Multi-label classification and features investigation of antimicrobial peptides with various functional classes，GIScience & Remote Sensing SCI 2023 鍾佳儒(Chia-Ru Chung)、劉鎮霆(Jhen-Ting Liou)、吳立青(Li-Ching Wu)、洪炯宗(Jorng-Tzong Horng)*、李宗夷(Tzong-Yi Lee)
Data-Driven Two-Stage Framework for Identification and Characterization of Different Antibiotic-Resistant Escherichia coli Isolates Based on Mass Spectrometry Data，Microbiology Spectrum SCI 2023 鍾佳儒(Chia-Ru Chung)、王信堯(Hsin-Yao Wang)、姚仲涵(Chun-Han Yao)、吳立青(Li-Ching Wu)、盧章智(Jang-Jih Lu)、洪炯宗(Jorng-Tzong Horng)*、李宗夷(Tzong-Yi Lee)
Towards Accurate Identification of Antibiotic-Resistant Pathogens through the Ensemble of Multiple Preprocessing Methods Based on MALDI-TOF Spectra，INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES SCI 2023 鍾佳儒(Chia-Ru Chung)、王信堯(Hsin-Yao Wang)、周伯翰(Po-Han Chou)、吳立青(Li-Ching Wu)、盧章智(Jang-Jih Lu)、洪炯宗(Jorng-Tzong Horng)*、李宗夷(Tzong-Yi Lee)
MDRSA: a web based-tool for rapid identification of multidrug resistant Staphylococcus aureus based on matrix-assisted laser desorption ionization-time of flight mass spectrometry，Frontiers in Microbiology SCI 2021 Chia-Ru Chung、Zhuo Wang、Jing-Mei Weng、Hsin-Yao Wang、Li-Ching Wu、Yi-Ju Tseng、Chun-Hsien Chen、Jang-Jih Lu、洪炯宗*
Clinically applicable system for rapidly predicting Enterococcus faecium susceptibility to vancomycin，Microbiology Spectrum SCI 2021 Hsin-Yao Wang、Chia-Ru Chung、Chao-Jung Chen、Ko-Pei Lu、Yi-Ju Tseng、Tzu-Hao Chang、Min-Hsien Wu、Wan-Ting Huang、Ting-Wei Lin、Tsui-Ping Liu、洪炯宗*
dbAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method for genomic and proteomic data，NUCLEIC ACIDS RESEARCH SCI 2021 Jhih-Hua Jhong、Lantian Yao、Yuxuan Pang、Zhongyan Li、Chia-Ru Chung、Rulan Wang、Shangfu Li、Wenshuo Li、Mengqi Luo、Renfei Ma
Large-scale mass spectrometry data combined with demographics analysis rapidly predicts methicillin resistance in Staphylococcus aureus，BRIEFINGS IN BIOINFORMATICS SCI 2020 Zhuo Wang、Hsin-Yao Wang、Chia-Ru Chung、洪炯宗、Jang-Jih Lu、Tzong-Yi Lee(Tzong-Yi Lee)*
A large-scale investigation and identification of methicillin-resistant Staphylococcus aureus based on peaks binning of matrix-assisted laser desorption ionization-time of flight MS spectra，BRIEFINGS IN BIOINFORMATICS SCI 2020 Hsin-Yao Wang、Chia-Ru Chung、Zhuo Wang、Shangfu Li、Bo-Yu Chu、洪炯宗、Jang-Jih Lu、Tzong-Yi Lee
Association of Fenofibrate and Diabetic Retinopathy in Type 2 Diabetic Patients: A Population-Based Retrospective Cohort Study in Taiwan，Medicina-Lithuania SCI 2020 Ying-Chieh Lin、陳玉菁(YU-CHING CHEN)、洪炯宗、Jui-Ming Chen
Incorporating hybrid models into lysine malonylation sites prediction on mammalian and plant proteins，Scientific Reports SCI 2020 Chia?Ru Chung、Ya?Ping Chang、Yu?Lin Hsu、Siyu Chen、Li?Ching Wu、洪炯宗、Tzong?Yi Lee
Characterization and Identification of Natural Antimicrobial Peptides on Different Organisms，INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES SCI 2020 Chia-Ru Chung、Jhih-Hua Jhong、Zhuo Wang、Siyu Chen、Yu Wan、洪炯宗、Tzong-Yi Lee(Tzong-Yi Lee)*
Rapid classification of group B Streptococcus serotypes based on matrixassisted laser desorption ionization-time of flight mass spectrometry and machine learning techniques，BMC BIOINFORMATICS SCI 2019 Hsin-Yao Wang、Wen-Chi Li、Kai-Yao Huang、Chia-Ru Chung、洪炯宗、Jen-Fu Hsu、Jang-Jih Lu、Tzong-Yi Lee
Using a Large Margin Context-Aware Convolutional Neural Network to Automatically Extract Disease-Disease Association from Literature: Comparative Analytic Study，JOURNAL OF MEDICAL INTERNET RESEARCH SCI 2019 Po-Ting Lai、Wei-Liang Lu、Ting-Rung Kuo、Chia-Ru Chung、Jen-Chieh Han、Richard Tzong-Han Tsai、洪炯宗
Incorporating Statistical Test and Machine Intelligence Into Strain Typing of Staphylococcus haemolyticus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry，Frontiers in Microbiology, vol.10 SCI 2019 Chia-Ru Chung、Hsin-Yao Wang、Frank Lien、Yi-Ju Tseng、Chun-Hsien Chen、Tzong-Yi Lee、Tsui-Ping Liu、洪炯宗*、Jang-Jih Lu
Characterization and identification of antimicrobial peptides with different functional activities.，BRIEFINGS IN BIOINFORMATICS SCI 2019 Chia-Ru Chung、Ting-Rung Kuo、Li-Ching Wu、Tzong-Yi Lee、洪炯宗*
Plasma miRNA profile is a biomarker associated with urothelial carcinoma in chronic hemodialysis patients，AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY SCI 2019 Chien-Lung Chen、Chen-Huan Lin、An-Lun Li、Chiu-Ching Huang、Biing-Yir Shen、Yun-Ru Chiang、Pei-Luen Fang、Huan-Cheng Chang、Kay-Lun Li、Wu-Chang Yang、洪炯宗*
Rapid detection of heterogeneous vancomycin-intermediate Staphylococcus aureus based on matrix-assisted laser desorption ionization time-of-flight: using a machine learning approach and unbiased validation，Frontiers in Microbiology, vol.9 pp.2393- SCI 2018 Hsin-Yao Wang、Chun-Hsien Chen、Tzong-Yi Lee、洪炯宗、Tsui-Ping Liu、Yi-Ju Tseng、Jang-Jih Lu(Jang-Jih Lu)*
Association Between Erectile Dysfunction and Subsequent Prostate Cancer Development: A Population-Based Cohort Study With Double Concurrent Comparison Groups，American Journal of Mens Health, vol.12 no.5 pp.1492-1502 SSCI 2018 Victor C. Kok(Victor C. Kok)*、Yi-Hsuan Hsiao、洪炯宗、Kung-Liang Wang
Gout as a risk factor for osteoporosis: epidemiologic evidence from a population-based longitudinal study involving 108,060 individuals，OSTEOPOROSIS INTERNATIONAL, vol.29 pp.973-985 SCI 2018 V. C. Kok(V. C. Kok)*、洪炯宗、M. N. Wang、Z.-Y. Chen、J.-T. Kuo、G.-D. Hung
Diagnostic value of serum procalcitonin, lactate, and high-sensitivity C-reactive protein for predicting bacteremia in adult patients in the emergency department，PeerJ, vol.5 pp.e4094- SCI 2017 Chiung-Tsung Lin、Jang-Jih Lu、Yu-Ching Chen、 Victor C. Kok、洪炯宗*
Increased risk of dental trauma in patients with allergic rhinitis: A nationwide population-based cohort study，PLoS One, vol.12 no.7 SCI 2017 Ming-Jhih Siao、Gunng-Shinng Chen、Wei-Cheng Lee、洪炯宗、Cheng-Wei Chang(Cheng-Wei Chang)*、Chung-Hsing Li
Association between History of Dental Amalgam Fillings and Risk of Parkinson's Disease A Population-Based Retrospective Cohort Study in Taiwan，PLoS One, vol.journal.p SCI 2016 Yung-Chuang Hsu、Cheng-Wei Chang、Hsin-Lin Lee、Chuan-Chung Chuang、Hsien-Chung Chiu、Wan-Yun Li、洪炯宗*、Earl Fu
Risk of Autoimmune Disease in Adults with Chronic Insomnia Requiring Sleep-Inducing Pills，Journal of Global Information Management, vol.31 no.9 pp.1019-1026 SSCI 2016 Victor C. Ko(Victor C. Kok)*、洪炯宗、Guo-Dung Hung、Jia-Li Xu、Tzu-Wei Hung、Yu-Ching Chen、Chien-Lung Chen
Risk and clinical predictors of osteoporotic fracture in East Asian patients with chronic obstructive pulmonary disease a population-based cohort study，PeerJ, vol.4 pp.e2634- SCI 2016 Ping-Hsueh Lee、Victor C. Kok、Po-Liang Chou、Ming-Chang Ku、Yu-Ching Chen、洪炯宗*
Mean Daily Dosage of Aspirin and the Risk of Incident Alzheimers Dementia in Patients with Type 2 Diabetes MellitusA Nationwide Retrospective Cohort Study in Taiwan，Journal of Diabetes Research, vol.2016 pp.ID 9027484- SCI 2016 Cheng-Wei Chang、洪炯宗、Chi-Chang Hsu、Jui-Ming Che(Jui-Ming Che)*
Comorbidities of pediatric systemic lupus erythematosus A 6-year nationwide pupulation-based study，JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION, vol.49 pp.257-263 SCI 2016 Pei-Chun Chan、Chong-Hua Yu、Kuo-Wei Yeh、洪炯宗*、Jing-Long Hu(Jing-Long Huang)*
Risk of Tuberculosis in Children with Juvenile Idiopathic Arthritis A Nationwide Population-Based Study in Taiwan，PLoS One pp.pone.01287- SCI 2015 Yi-Chen Hsin、Lai-Zhen Zhuang、Kuo-Wei Yeh、Cheng-Wei Chang、洪炯宗*、Jing-Long Huang
Regular inhaled corticosteroids in adult-onset asthma and the risk for future cancer a population-based cohort study with proper person-time analysis，Therapeutics and Clinical Risk Management, vol.11 pp.489-499 SCI 2015 Victor C Kok、洪炯宗*、Hsu-Kai Huang、Tsung-Ming Chao、Ya-Fang Hong
Cancer risk in patients aged 30 years and above with type 2 diabetes receiving antidiabetic monotherapy a cohort study using metformin as the comparator，Therapeutics and Clinical Risk Management, vol.11 pp.1315-1323 SCI 2015 Yu-Ching Chen、Victor C Kok(Victor C Kok)*、Ching-Hsuan Chien、洪炯宗、Jeffrey J P Tsai
Acarbose Treatment and the Risk of Cardiovascular Disease in Type 2 Diabetic Patients A Nationwide Seven-Year Follow-Up Study，Journal of Diabetes Research, vol.2014 pp.ID 812628- SCI 2014 Jui-Ming Chen、Cheng-Wei Chang、Ying-Chieh Lin、洪炯宗*、Wayne H.-H. Sheu
Reappraisal of the Etiology of Extracorpuscular Non-Autoimmune Acquired Hemolytic Anemia in 2657 Hospitalized Patients with Non-Neoplastic Disease，Clinical Medicine Insights: Pathology, vol.7 pp.11- SCI 2014 Victor C. Ko(Victor C. Kok)*、Chien-Kuan Lee、洪炯宗、Che-Chen Lin、Fung-Chang Sung
Effects of Statins on Incident Dementia in Patients with Type 2 DM A Population-Based Retrospective Cohort Study in Taiwan，PLoS One, vol.Volume 9 no.Issue 2 pp.e88434-e88434 SCI 2014 Jui-Ming Chen、Cheng-Wei Chang、Tzu-Hao Chang、Chi-Chang Hsu、洪炯宗、Wayne H-H Sheu
Juvenile Arthritis and the Short-term Risk for Cardiometabolic Outcomes，Experimental & Clinical Cardiology, vol.Volume 20 no.Issue 8 pp.2832-2840 SCI 2014 Victor C. Kok1、洪炯宗、Jing-Long Huang4
Population-based cohort study on the risk of malignancy in East Asian children with Juvenile idiopathic arthritis，BMC CANCER, vol.14 pp.634- SCI 2014 Victor C Kok、洪炯宗、Jing-Long Huang、Kuo-Wei Yeh、Jia-Jing Gau、Cheng-Wei Chan、Lai-Zhen Zhuang
A Novel Approach for Discovering Condition-Specific Correlations of Gene Expressions within Biological Pathways by Using Cloud Computing Technology，BioMed Research International, vol.vol2014 pp.ID763237- MI 2014 Tzu-Hao Chang、Shih-LinWu、Wei-JenWang、洪炯宗、Cheng-Wei Chang
Allopurinol Therapy in Gout Patients Does Not Associate with Beneficial Cardiovascular Outcomes A Population-Based Matched-Cohort Study，PLoS One, vol.Volume 9 no.Issue 6 pp.e99102-e99102 SCI 2014 Victor C. Kok、洪炯宗、Wan-Shan Chang、Ya-Fang Hong、Tzu-Hao Chang
Burden of systemic lupus erythematosus in Taiwan: a population-based survey，RHEUMATOLOGY INTERNATIONAL SCI 2013 Kuo-Wei Yeh、Chong-Hua Yu、Pei-Chun Chan、洪炯宗(Jorng-Tzong Horng)*、Jing-Long Huang
An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs，BMC BIOINFORMATICS SCI 2013 Tzu-Hao Chang、Hsi-Yuan Huang、Justin Bo-Kai Hsu、Shun-Long Weng、洪炯宗(Jorng-Tzong Horng)*、Hsien-Da Huang
EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou's PseAAC，JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN SCI 2013 Tzu-Hao Chang、Li-Ching Wu、Tzong-Yi Lee、Shu-Pin Chen、Hsien-Da Huang、洪炯宗(Jorng-Tzong Horng)*
Statins Use Increases the Risk of Urinary Tract Cancer Preliminary Results of a Nationwide Population-based Case-Control Study，Asia-Pacific Journal of Clinical Oncology, vol.9 pp.190-191 SCI 2013 Victor C KOK(Victor C KOK)*、洪炯宗、David AGUSTRIAWAN
Analysis and Construction of Genetic Network for Mice Brain Microarray Datasets，Journal of Medical and Biological Engineering, vol.33 no.4 pp.400-405 SCI 2013 Jui-Ming Chen、Yu-An Liu、Yu-Ling Jung、Yung-Kuan Chan、洪炯宗、Jen-Hui Syu、Meng-Hsiun Tsai(Meng-Hsiun Tsai)*
Development Pattern Recognition Model for the Classification of Circuit Probe Wafer Maps on Semiconductors，IEEE Transactions on Components Packaging and Manufacturing Technology SCI 2012 Cheng-Wei Chang、Tsung-Ming Chao、洪炯宗(Jorng-Tzong Horng)、Chien-Feng Lu、葉榮輝(Rong-Hwei Yeh)
Diabetic Patients with Severe Sepsis Admitted to Intensive Care Unit Do Not Fare Worse than Non- Diabetic Patients: A Nationwide Population-Based Cohort Study，PLoS One SCI 2012 Cheng-Wei Chang、Victor C. Kok、Ta-Chien Tseng、洪炯宗(Jorng-Tzong Horng)、Chun-Eng Liu
Gout and subsequent increased risk of cardiovascular mortality in non-diabetics aged 50 and above: a population-based cohort study in Taiwan，BMC Cardiovascular Disorders SCI 2012 Victor C Kok、洪炯宗(Jorng-Tzong Horng)*、Hsin-Li Lin、陳玉菁(Yu-ching Chen)、Yan-Jun Chen、Kwan-Fu Cheng
Statins Use Increases the Risk of Urinary Tract Cancer: Preliminary Results of a Nationwide Population-based Case-Control Study，Asia-Pacific Journal of Clinical Oncology SCI 2012 Victor C Kok、洪炯宗(Jorng-Tzong Horng)、David Agustriawan
Metachronous Colorectal Cancer in Taiwan:Analyzing 20 Years of Data from Taiwan Cancer Registry，International Journal of Clinical Oncology SCI 2012 Tzu-An Chen、Wen-Chu Lin、洪炯宗(Jorng-Tzong Horng)*
Improved Candidate Biomarker Detection Based on Mass Spectrometry Data Using the Hilbert-Huang Transform，PROTEIN AND PEPTIDE LETTERS SCI 2012 Li-Ching Wu、Ping-Heng Hsieh、洪炯宗(Jorng-Tzong Horng)、Yu-Jen Jou、Chia-Der Lin、Kuang-Fu Cheng、Cheng-Wen Lin、Shih-Yin Chen
Characterization and prediction of mRNA polyadenylation sites in human genes，Medical and Biological Engineering and Computing EI 2011 Chang TH、Wu LC、Chen YT、Huang HD、Liu BJ、Cheng KF、洪炯宗(Jorng-Tzong Horng)*
Prediction of small non-coding RNA in bacterial genomes using support vector machines，EXPERT SYSTEMS WITH APPLICATIONS no.37 pp.5549-5557 SCI 2010 Tzu-Hao Chang、Li-Ching Wu、Jun-Hong Lin、Hsien-Da Huang、Baw-Jhiune Liu、Kuang-Fu Cheng、洪炯宗(Jorng-Tzong Horng)
A Novel Preprocessing Method Using Hilbert Huang Transform for MALDI-TOF and SELDI-TOF Mass Spectrometry Data，PUBLIC LIBRARY of SCIENCE no.5 pp.1-15 Other 2010 Li-Ching Wu、Hsin-Hao Chen、洪炯宗(Jorng-Tzong Horng)
Incorporating Support Vector Machine for Identifying Protein Tyrosine Sulfation Sites，JOURNAL OF COMPUTATIONAL CHEMISTRY, vol.30 no.15 pp.2526-2537 SCI 2009 WEN-CHI CHANG、TZONG-YI LEE、DRAY-MING SHIEN、JUSTIN BO-KAI HSU、洪炯宗(Jorng-Tzong Horng)、PO-CHIANG HSU、TING-YUAN WANG、HSIEN-DA HUANG、RONG-LONG PAN
An expert system to identify co-regulated gene groups from time-lagged gene clusters using cell cycle expression data，EXPERT SYSTEMS WITH APPLICATIONS SCI 2009 Li-Ching Wu、Jhih-Long Huang、洪炯宗(Jorng-Tzong Horng)*、Hsien-Da Huang
Incorporating Structural Characteristics for Identification of Protein Methylation Sites，JOURNAL OF COMPUTATIONAL CHEMISTRY, vol.30 no.9 pp.1532-1543 SCI 2009 DRAY-MING SHIEN、TZONG-YI LEE、WEN-CHI CHANG、JUSTIN BO-KAI HSU、洪炯宗(Jorng-Tzong Horng)*、PO-CHIANG HSU、TING-YUAN WANG、HSIEN-DA HUANG
Computational identification of riboswitches based on RNA conserved functional sequences and conformations，RNA-A PUBLICATION OF THE RNA SOCIETY, vol.15 no.7 pp.1426-1430 SCI 2009 TZU-HAO CHANG、HSIEN-DA HUANG、LI-CHING WU、CHI-TA YEH、BAW-JHIUNE LIU、洪炯宗(Jorng-Tzong Horng)*
An expert system to classify microarray gene expression data using gene selection by decision tree，EXPERT SYSTEMS WITH APPLICATIONS, vol.36 no.5 pp.9072-9081 SCI 2009 洪炯宗(Jorng-Tzong Horng)*、Li-Cheng Wu、Baw-Juine Liu、Jun-Li Kuo、Wen-Horng Kuo、Jin-Jian Zhang
An expert system to predict protein thermostability using decision tree，EXPERT SYSTEMS WITH APPLICATIONS, vol.36 no.5 pp.9007-9014 SCI 2009 Li-Cheng Wu、Jian-Xin Lee、Hsien-Da Huang、Baw-Juine Liu、洪炯宗(Jorng-Tzong Horng)*
Detecting LTR structures in human genomic sequences using profile hidden Markov models，EXPERT SYSTEMS WITH APPLICATIONS, vol.36 no.1 pp.668-674 SCI 2009 Li-Ching Wu、Hsien-Da Huang、Yu-Chung Chang、Ying-Chun Lee、洪炯宗(Jorng-Tzong Horng)*
A system to integrate the analysis of genetic variations occurring within regulatory elements and their possible effects，JOURNAL OF COMPUTATIONAL BIOLOGY SCI 2009 洪炯宗(Jorng-Tzong Horng)、Li-Ching Wu、Yong-An Chen